RESEARCH PUBLICATIONS

(&equal contributions, @corresponding author)

14. Libkind D (&), Hittinger CT (&), Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proceedings of the National Academy of Sciences of the USA in press.

13. Scannell DR (&), Zill OA (&@), Rokas A, Payen C, Dunham MJ, Eisen MB, Rine J, Johnston M, Hittinger CT (@). 2011. The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3: Genes | Genomes | Genetics 1: 11-25.

12. Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, Rokas A. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464: 54-58.

11. Hittinger CT, Johnston M, Tossberg JT, Rokas A. Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life. Proceedings of the National Academy of Sciences of the USA 107 (4): 1476-1481.

10. Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. Molecular Biology and Evolution 26 (12): 2731-2744.

9. Hittinger CT, Carroll SB. Evolution of an insect-specific GROUCHO interaction motif in the ENGRAILED selector protein. Evolution and Development 10 (5): 537-545.

8. Hittinger CT (@), Carroll SB (@). 2007. Gene duplication and the adaptive evolution of a classic genetic switch. Nature 449 (7163): 677-681.

8.0

7. Tour E, Hittinger CT, McGinnis W. 2005. Evolutionarily conserved domains required for activation and repression functions of the Drosophila Ultrabithorax protein. Development 132 (23): 5271-5281.

6. Hittinger CT, Stern DL, Carroll SB. 2005. Pleiotropic functions of a conserved insect-specific Hox peptide motif. Development 132 (23): 5261-5270.

6.0

5. Hittinger CT, Rokas A, Carroll SB. 2004. Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proceedings of the National Academy of Sciences of the USA 101 (39): 14144-14149.

4. Palangat M, Hittinger CT, Landick R. 2004. Downstream DNA selectively affects a paused conformation of human RNA polymerase II. Journal of Molecular Biology 341 (2): 429-442.

3. King N, Hittinger CT, Carroll SB. 2003. Evolution of key cell signaling and adhesion protein families predates animal origins. Science 301 (5631): 361-363.

4.8

2. Guettler S, Jackson EN, Lucchese SA, Honaas L, Green A, Hittinger CT, Tian Y, Lilly WW, and Gathman AC. 2003. ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media. Fungal Genetics and Biology 39 (2): 191-198.

1. Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J. 2002. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proceedings of the National Academy of Sciences of the USA 99 (15): 9650-9655.

3.0

REVIEWS AND COMMENTARY

R2. Hittinger CT (@), Hesselberth JR. 2010. Nucleosome patterning evolution: steady aim despite moving targets. Molecular Systems Biology 6: 376.

R1. Rokas A, Hittinger CT. 2007. Transcriptional rewiring: the proof is in the eating.  Current Biology 17 (16): R626-R628.